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Dr. Karsten Hokamp

Senior Experimental Officer - Bioinforma (Genetics)


Language Skill Reading Skill Writing Skill Speaking
English Fluent Fluent Fluent
German Fluent Fluent Fluent
Fergus C, Al-Qasem M, Cotter M, McDonnell CM, Sorrentino E, Chevot F, Hokamp K, Senge MO, Southern JM, Connon SJ, Kelly VP, The human tRNA-guanine transglycosylase displays promiscuous nucleobase preference but strict tRNA specificity., Nucleic acids research, 2021, p4877-4890 , Journal Article, PUBLISHED  TARA - Full Text  DOI
Kenny C, O'Meara E, Ula" M, Hokamp K, O'Sullivan MJ., Global Chromatin Changes Resulting from Single-Gene Inactivation-The Role of SMARCB1 in Malignant Rhabdoid Tumor., Cancers, 13, (11), 2021, Journal Article, PUBLISHED  DOI
Powers TR, Haeberle AL, Predeus AV, Hammarlöf DL, Cundiff JA, Saldaña-Ahuactzi Z, Hokamp K, Hinton JCD, Knodler LA., Intracellular niche-specific profiling reveals transcriptional adaptations required for the cytosolic lifestyle of Salmonella enterica., PLoS pathogens, 17, (8), 2021, pe1009280 , Journal Article, PUBLISHED  DOI
Ciara G Doran, Ryoichi Sugisawa, Michael Carty, Fiona Roche, Claire Fergus, Karsten Hokamp, Vincent P Kelly, Andrew G Bowie, CRISPR/Cas9-mediated SARM1 knockout and epitope-tagged mice reveal that SARM1 does not regulate nuclear transcription, but is expressed in macrophages, Journal of Biological Chemistry, 297, (6), 2021, Journal Article, PUBLISHED  TARA - Full Text  DOI  URL
Edwards, S.C. and Sutton, C.E. and Ladell, K. and Grant, E.J. and McLaren, J.E. and Roche, F. and Dash, P. and Apiwattanakul, N. and Awad, W. and Miners, K.L. and Lalor, S.J. and Ribot, J.C. and Baik, S. and Moran, B. and McGinley, A. and Pivorunas, V. and Dowding, L. and Macoritto, M. and Paez-Cortez, J. and Slavin, A. and Anderson, G. and Silva-Santos, B. and Hokamp, K. and Price, D.A. and Thomas, P.G. and McLoughlin, R.M. and Mills, K.H.G., A population of proinflammatory T cells coexpresses αβ and γΎ T cell receptors in mice and humans, Journal of Experimental Medicine, 217, (5), 2020, Notes: [cited By 1], Journal Article, PUBLISHED  TARA - Full Text  DOI
Palfi, A. and Yesmambetov, A. and Humphries, P. and Hokamp, K. and Farrar, G.J., Non-photoreceptor Expression of Tulp1 May Contribute to Extensive Retinal Degeneration in Tulp1-/- Mice, Frontiers in Neuroscience, 14, (656), 2020, Notes: [cited By 1], Journal Article, PUBLISHED  TARA - Full Text  DOI
Bricio-Moreno L, Chaguza C, Yahya R, Shears RK, Cornick JE, Hokamp K, Yang M, Neill DR, French N, Hinton JCD, Everett DB, Kadioglu A., Lower Density and Shorter Duration of Nasopharyngeal Carriage by Pneumococcal Serotype 1 (ST217) May Explain Its Increased Invasiveness over Other Serotypes., mBio : Duplicate, marked for deletion, 11, (6), 2020, Journal Article, PUBLISHED  DOI
Canals R, Hammarlöf DL, Kröger C, Owen SV, Fong WY, Lacharme-Lora L, Zhu X, Wenner N, Carden SE, Honeycutt J, Monack DM, Kingsley RA, Brownridge P, Chaudhuri RR, Rowe WPM, Predeus AV, Hokamp K, Gordon MA, Hinton JCD., Adding function to the genome of African Salmonella Typhimurium ST313 strain D23580., PLoS biology, 17, (1), 2019, pe3000059 , Journal Article, PUBLISHED  DOI
Sanfeliu, A. and Hokamp, K. and Gill, M. and Tropea, D., Transcriptomic analysis of Mecp2 mutant mice reveals differentially expressed genes and altered mechanisms in both blood and brain, Frontiers in Psychiatry, 10, (278), 2019, Notes: [cited By 1], Journal Article, PUBLISHED  TARA - Full Text  DOI
Kenny, Colin and McDonagh, Naomi and Lazaro, Antonio and O'Meara, Elaine and Klinger, Rut and O'Connor, Darran and Roche, Fiona and Hokamp, Karsten and O'Sullivan, Maureen J, Dysregulated mitogen-activated protein kinase signalling as an oncogenic basis for clear cell sarcoma of the kidney, The Journal of pathology, 244, (3), 2018, p334 - 345, Journal Article, PUBLISHED  DOI
  

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Harris NL, Cock PJA, Fields CJ, Hokamp K, Maia J, Munoz-Torres M, Sharan M, Williams J., BOSC 2021, the 22nd Annual Bioinformatics Open Source Conference., F1000Research, 10, 2021, Journal Article, PUBLISHED
Harris NL, Cock PJA, Fields CJ, Hokamp K, Maia J, Munoz-Torres M, Taschuk M, Yehudi Y., The 21st annual Bioinformatics Open Source Conference (BOSC 2020, part of BCC2020)., F1000Research, 9, 2020, Journal Article, PUBLISHED
Harris NL, Cock PJA, Fields CJ, Greshake Tzovaras B, Heuer M, Hokamp K, Munoz-Torres M, Peltzer A, Rieck B, Wiencko H, Yehudi Y., BOSC 2019, the 20th annual Bioinformatics Open Source Conference., F1000Research, 8, 2019, Journal Article, PUBLISHED
Hokamp K, Perl One-Liners: Bridging the Gap Between Large Data Sets and Analysis Tools., Methods in molecular biology (Clifton, N.J.), 1326, 2015, p177-191 , Journal Article, PUBLISHED