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Dr. Karsten Hokamp

Senior Experimental Officer - Bioinforma (Genetics)

Language Skill Reading Skill Writing Skill Speaking
English Fluent Fluent Fluent
German Fluent Fluent Fluent
Shen N, Maggio M, Woods I, C Lowry M, Almasri R, Gorgun C, Eichholz KF, Stavenschi E, Hokamp K, Roche FM, O'Driscoll L, Hoey DA., Mechanically activated mesenchymal-derived bone cells drive vessel formation via an extracellular vesicle mediated mechanism., Journal of tissue engineering, 14, 2023, p20417314231186918 , Journal Article, PUBLISHED  DOI
Kelly TE, Spillane CL, Ward MP, Hokamp K, Huang Y, Tewari P, Martin CM, Norris LA, Mohamed BM, Bates M, Brooks R, Selemidis S, Brooks DA, Kamran W, Saadeh FA, O'Toole SA, O'Leary JJ., Plasminogen activator inhibitor 1 is associated with high-grade serous ovarian cancer metastasis and is reduced in patients who have received neoadjuvant chemotherapy., Frontiers in cell and developmental biology, 11, 2023, p1150991 , Journal Article, PUBLISHED  DOI
Moran, B. and Smith, C.M. and Zaborowski, A. and Ryan, M. and Karman, J. and Dunstan, R.W. and Smith, K.M. and Hambly, R. and Musilova, J. and Petrasca, A. and Fabre, A. and O'Donnell, M. and Hokamp, K. and Mills, K.H.G. and Housley, W.J. and Winter, D.C. and Kirby, B. and Fletcher, J.M., Targeting the NLRP3 inflammasome reduces inflammation in hidradenitis suppurativa skin, The British journal of dermatology, 189, (4), 2023, p447-458 , Notes: [cited By 1], Journal Article, PUBLISHED  DOI
Lee B, Church M, Hokamp K, Alhussain MM, Bamagoos AA, Fleming AB., Systematic analysis of tup1 and cyc8 mutants reveals distinct roles for TUP1 and CYC8 and offers new insight into the regulation of gene transcription by the yeast Tup1-Cyc8 complex., PLoS genetics, 19, (8), 2023, pe1010876 , Journal Article, PUBLISHED  DOI
Kumwenda B, Canals R, Predeus AV, Zhu X, Kröger C, Pulford C, Wenner N, Lora LL, Li Y, Owen SV, Everett D, Hokamp K, Heyderman RS, Ashton PM, Hinton JCD, Salmonella entericaserovar Typhimurium ST313 sublineage 2.2 has emerged in Malawi with a characteristic gene expression signature and a fitness advantage, 2023, Journal Article, PUBLISHED  DOI
de la Cerda-Garcia Caro, R. and Hokamp, K. and Roche, F. and Thompson, G. and Timouma, S. and Delneri, D. and Bond, U., Aneuploidy influences the gene expression profiles in Saccharomyces pastorianus group I and II strains during fermentation, PLoS Genetics, 18, (4), 2022, Notes: [cited By 0], Journal Article, PUBLISHED  TARA - Full Text  DOI
de la Cerda Garcia-Caro, R. and Thompson, G. and Zhang, P. and Hokamp, K. and Roche, F. and Carlin, S. and Vrhovsek, U. and Bond, U., Enhanced flavour profiles through radicicol induced genomic variation in the lager yeasts, Saccharomyces pastorianus, Yeast, 39, (10), 2022, p535-547 , Notes: [cited By 0], Journal Article, PUBLISHED  DOI
Harris NL, Hokamp K, Ménager H, Munoz-Torres M, Unni D, Vasilevsky N, Williams J., BOSC 2022: the first hybrid and 23rd annual Bioinformatics Open Source Conference., F1000Research, 11, 2022, p1034 , Journal Article, PUBLISHED  DOI
Drakeford, C. and Aguila, S. and Roche, F. and Hokamp, K. and Fazavana, J. and Cervantes, M.P. and Curtis, A.M. and Hawerkamp, H.C. and Dhami, S.P.S. and Charles-Messance, H. and Hackett, E.E. and Chion, A. and Ward, S. and Ahmad, A. and Schoen, I. and Breen, E. and Keane, J. and Murphy, R. and Preston, R.J.S. and O†Sullivan, J.M. and Sheedy, F.J. and Fallon, P. and O†Donnell, J.S., von Willebrand factor links primary hemostasis to innate immunity, Nature Communications, 13, (1), 2022, Notes: [cited By 1], Journal Article, PUBLISHED  DOI
Kenny C, O'Meara E, Ula" M, Hokamp K, O'Sullivan MJ., Global Chromatin Changes Resulting from Single-Gene Inactivation-The Role of SMARCB1 in Malignant Rhabdoid Tumor., Cancers, 13, (11), 2021, Journal Article, PUBLISHED  DOI

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Harris NL, Cock PJA, Fields CJ, Hokamp K, Maia J, Munoz-Torres M, Sharan M, Williams J., BOSC 2021, the 22nd Annual Bioinformatics Open Source Conference., F1000Research, 10, 2021, Journal Article, PUBLISHED
Harris NL, Cock PJA, Fields CJ, Hokamp K, Maia J, Munoz-Torres M, Taschuk M, Yehudi Y., The 21st annual Bioinformatics Open Source Conference (BOSC 2020, part of BCC2020)., F1000Research, 9, 2020, Journal Article, PUBLISHED
Harris NL, Cock PJA, Fields CJ, Greshake Tzovaras B, Heuer M, Hokamp K, Munoz-Torres M, Peltzer A, Rieck B, Wiencko H, Yehudi Y., BOSC 2019, the 20th annual Bioinformatics Open Source Conference., F1000Research, 8, 2019, Journal Article, PUBLISHED
Hokamp K, Perl One-Liners: Bridging the Gap Between Large Data Sets and Analysis Tools., Methods in molecular biology (Clifton, N.J.), 1326, 2015, p177-191 , Journal Article, PUBLISHED