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Dr. Charles Patterson

Associate Professor (Physics)
LLOYD INSTITUTE
      
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Dr. Charles Patterson

Associate Professor (Physics)
LLOYD INSTITUTE


1982 B.Sc. (Hons.) in Chemistry, University of Bristol. 1982-85 PhD in Chemistry, University of Cambridge. PhD topic: Reactions at single crystal surfaces. 1986-90 Postdoctoral Fellow, University of Pennsylvania. Research topics: Electron energy loss spectroscopy and X ray photoelectron spectroscopy. Ab initio computational studies of surfaces and clusters. 1987 Visiting researcher A.T. and T. Bell Laboratories, Murray Hill, New Jersey. Research topic: Low energy ion scattering from NiAl(110). 1990 Postdoctoral Research Fellow, Department of Physics, TCD. Ab initio computational studies of optical properties of semiconductor surfaces. 1991-04 Lecturer in Science of Materials, Department of Physics,TCD. Research Interests: Computational materials science. 1997-11 Director of Computational Physics Degree Course, TCD. 2004-current Senior Lecturer/Associate Professor, Department of Physics, TCD.
  Atomic and molecular physics   Computational Physics   Condensed matter, electronic, magnetic and superconductive properties   Condensed matter, optical and dielectric properties   Magnetism and spin electronics   Quantum chemistry   Quantum mechanics   Theory and computational physics
Project Title
 Exciton Computer Code
From
January 2000
To
Current
Summary
My research consists of developing and applying electronic structure methods to problems in molecular, condensed matter and materials physics. Electronic structure theory is now a relatively mature field and density functional theory codes are available for many applications. More accurate many body methods, based on electron Green's functions, and electron-hole polarization propagators yield the most accurate predictions of excited state properties (Excitons) of molecules and condensed matter. The Exciton code performs self-consistent field Hartree-Fock calculations as well as GW (Green's function) and Bethe-Salpeter Equation calculations. Electronic structure codes divide roughly into those which represent electron wave functions using plane waves and those which use local orbitals. The former are best suited to crystalline materials with limited numbers of atoms per unit cell, the latter have many advantages for molecules, especially large molecules and systems with little or no symmetry. Accurate electronic structure methods such as the GW Green's function method and Bethe-Salpeter Equation polarization propagator method have applications in optical excitations of biomolecules, photovoltaics and photocatalysts for light harvesting and chemical reaction promotion such as artificial photosynthesis. Development of the Exciton code was begun with two graduate students, Drs. Conor Hogan and Svjetlana Galamic-Mulaomerovic, over a decade ago. That first phase of code development was based on a plane wave representation of the Coulomb potential, which is straightforward to code. The original Exciton code resulted in two publications in Physical Review B in 2005. Based on experience gained in developing the first Exciton code, I began developing an entirely new version of the code during a sabbatical year spent at the Quantum Theory Project, University of Florida, hosted by Prof. Rodney Bartlett. The new code employs the Ewald representation of the Coulomb potential for periodic systems. It makes full use of point, layer or space group symmetries in real and reciprocal space as well as time-reversal symmetry in reciprocal space. Symmetry is also used to transform the Gaussian atomic orbital basis into a symmetry adapted basis, which results in block diagonalization of operators, a reduction of running time and increased accuracy of wave functions. The many-body part of the code relies on an approach called Density fitting, which greatly reduces the time required to calculate Coulomb integrals over molecular orbitals. Current applications of the self-consistent Hartree-Fock, GW and BSE modules in the code to moleclues and molecular complexes have been tested using up to 1800 basis functions in the wave function basis and 4500 basis functions in the density fitting basis. Future development of the code will include the capacity to perform GW and Bethe-Salpeter Equation calculations for crystalline systems. Applications where the code would have significant advantages over plane wave codes are metal organic framework (MOF) materials which have open structures. Exciton is developed in C++ and MPI and consists of around 50,000 lines of code. The current Exciton code is also interfaced to the Crystal code which allows it to perform single-particle optical excitations calculations using wave functions and energy band structures from Crystal. This part of Exciton led to 15 publications in the seven year period since 2010. This version of the code produced two publications in 2005.
Funding Agency
Higher Education Authority/Enterprise Ireland
Programme
PRTLI IITAC II / Basic Research Award
Project Type
Computational/Theoretical
Project Title
 Surface and Interface Optics Calculations
From
October 2009
To
September 2014
Summary
Light can be used as a probe of the electronic properties of matter in situations where conventional light-in/charged particle-out spectroscopies such as photoelectron spectroscopies cannot. The ejected electron in photoelectron spectroscopy cannot be detected if the ambient surrounding the sample is not high vacuum. In contrast, light-in/light-out spectroscopies such as reflectance measurements can be used without a vacuum ambient. The surface and interface optics project is focussed on applying density functional theory (DFT) methods to calculation of optical spectra of surfaces and interfaces of semiconductors and oxides. The work is done in collaboration with experimentalists, notably Prof. John McGilp in the School of Physics. Recent work on the interface between GaP thin films and the underlying Si substrate has been done with Prof. T. Hannappel and Dr. O. Supplie at the Helmholtz-Zentrum, Berlin who are experimentalists working on this prototype system for III-V semiconductor growth on silicon. Reflection of light by a surface depends on the dielectric responses of atoms from the surface layer to many layers below the surface. In order to use visible light as a probe of electrons at surfaces, it is essential to distinguish the reflected signal coming from the layers immediately at the surface from that coming from many more layers near the surface. One way of doing this is to choose systems where the surface is anisotropic in the surface plane while the underlying layers are isotropic. An example of an isotropic surface is where surface atoms form pairs (or dimerize) in chains at (001) surfaces of silicon or III-V semiconductors. If the difference in reflectivity of light is measured in normal incidence with the optical polarization vector aligned parallel or perpendicular to the dimer chains, then the surface contribution to reflectivity arises only from the anisotropic surface. Reflectance anisotropy spectroscopy (RAS) consists of measuring this difference, usually in the photon energy range from 1 to 5 eV. The experimental measurement by itself yields only a fingerprint of the surface. In order to use RAS to obtain information about electronic properties of the surface, experimental data must be compared to results of our calculations using the Crystal and Exciton codes. These calculations show which features in a RAS spectrum arise from transitions between particular surface states. Armed with this analysis, experimentalists may use the RAS technique to diagnose the electronic properties of a surface on which a semiconductor is being grown under non-high vacuum conditions. One recent highlight of this work has been application of the methods that we have developed since 2010 for calculating RAS for surfaces, to the interface between GaP thin films grown on the Si(001) surface by Hannappel and Supplie in Berlin. They measured the dielectric anisotropy of the interface between the thin film and silicon substrate. My PhD student, Pankaj Kumar, calculated the dielectric anisotropy for this interface using Crystal and Exciton and found agreement between theory and experiment only when the silicon substrate was doped so that the interface was semiconducting. Our work showed that the measured interface dielectric anisotropy arises from electrons trapped in interface states localized in several layers of silicon atoms closest to the first P layer in the GaP thin film. It also showed that if the GaP layer was terminated by a Ga/Si interface, the interface dielectric anisotropy spectrum was quite different. Thus a combination of theory and experiment can show whether a buried interface is conducting or semiconducting and whether the GaP layer in contact with the Si substrate is Ga or P. Our work is, as far as we can tell, the first application of DFT to the optical anisotropy of an interface and it has been accepted for publication in Physical Review Letters.
Funding Agency
Science Foundation Ireland
Programme
Research Frontiers Programme
Project Title
 Charge and Orbital Order in Magnetite
From
To
Summary
Many of the most exotic states and properties of matter such as superconductivity, charge and spin order, etc arise in materials with unpaired electron spins on metal ions such as Fe3+ or Cu2+. My work in this area includes first principles hybrid density functional theory (DFT) calculations on manganites, cuprates and magnetite. Magnetite is a ferrimagnet, also known as lodestone, which has an unusual phase transition between a conducting and semiconducting state at 120 K, known as the Verwey transition. The contribution that I and my student, Andrew Rowan, and Prof. Lev Gasparov at the University of North Florida made in this area is in understanding charge order in the above mentioned materials. My most recent work in this area has been on elucidating the charge order in magnetite in the semiconducting phase of magnetite which exists below the Verwey temperature. The transition has puzzled physicists, including many distinguished scientists, since its discovery by Verwey in 1939. The problem is quite simple to explain. Magnetite consists of Fe3+ ions in tetrahedral 'A' sites and an equal proportion of Fe2+ and Fe3+ ions in octahedral 'B' sites. Fe2+ and Fe3+ ions are in d6 and d5 electronic configurations, respectively. This means that half of the ions at 'B' sites contain one minority spin electron, which is responsible for conduction above the Verwey transition temperature and must somehow become immobile below the Verwey temperature. It is this question that has puzzled physicists for 75 years. A complicating factor in determining the cause of the Verwey transition was that the structure of magnetite in the low temperature phase was poorly resolved because if multiple twinning of domains. It was finally resolved by Attfield and coworkers who used x-ray diffraction on a micron sized grain with one dominant domain in 2012 [Nature 481, 173 (2012)]. The unit cell contains 112 ions and has 16 types of Fe 'B' site and 8 types of 'A' site. The low temperature phase shows charge ordering of electrons on Fe 'B' sites, which is associated with the change in electric conductivity and which was dubbed 'trimeron' formation by Attfield and coworkers. Some chains of 3 Fe ions showed on of the conduction electrons being localized on 3 Fe ions. My contribution to this problem was to calculate the NMR (nuclear magnetic resonance) spectra of 'A' and 'B' site Fe ions in the newly discovered structure of magnetite as a function of crystal orientation in an external magnetic field. NMR is a potentially powerful probe of charge order in Fe compounds because 57Fe is a spin " nucleus which will couple to the minority spin electron in d6 Fe2+. Measurement of the NMR resonance frequency as a function of orientation of the magnetite crystal in a magnetic field yields curves which are characteristic of the shape of the d orbital containing this electron. My paper published in Physical Review B in 2014 showed that hybrid DFT calculations using the Crystal code and the crystal structure published by Attfield and coworkers in 2012 could reproduce the variation of NMR frequency with crystal orientation, and therefore that the charge order in our calculations was correct. I concluded that molecular polarons and charge localization in zig-zag chains (Attfield's trimerons) was responsible for the Verwey transition. Hybrid DFT calculation of 57Fe NMR resonances and orbital order in magnetite , C. H. Patterson, Phys. Rev. B 90, 075134 (2014) Hybrid Density Functional Theory Applied to Magnetite: Crystal Structure, Charge Order and Phonons, A. D. Rowan, C. H. Patterson and L. V. Gasparov, Phys. Rev. B 79 205103 (2009)
Funding Agency
Science Foundation Ireland
Programme
Research Frontiers Programme

Details Date
Board or Steering Group Member, Psi-k Network www.Psi-k.org. European Network funded by successive European Commission Human Capital and Mobility and two 5 year European Science Foundation grants. 1994 to 2016
Board Member, European Physical Society Computational Physics Group. I served a five year term on the EPS-CPG. This entailed attending board meetings in Prague, organising a biennial Summer School on Computing Techniques in Physics and organisation of the International Union of Pure and Applied Physics(IUPAP) Conference on Computational Physics in Granada, Spain in 2000. I chaired the EPS-CPG Summer School in the Czech Republic in 2000. 1997 to 2002
I have acted as a PhD External Examiner for the Department of Chemistry, University of Cambridge, Tyndall National Laboratory/University College Cork, Department of Physics, University of Calcutta, India, Department of Physics, IIT Jodhpur, India. Oral examinations were conducted for the first two and thesis reports given for the latter two.
Since January 2023 I have reviewed at least one manuscript for the following journals: Journal of the American Chemical Society (IF 14.4), NPJ Computational materials (IF 9.7), Nanoscale (IF 8.3), Physical Review Letters (IF 8.1), Journal of Physics and Chemistry of Solids (IF 4.3), Heliyon (IF 3.4), Physical Review B (IF 3.2), Physical Review Materials (IF 3.1), Journal of Applied Physics (IF 2.3) 2023-2024
I have served two three year terms as an Institute of Physics in Ireland (IOPI) committee member. The first of these terms was in the 1990"s which included a 2 year term as IOPI Treasurer. The second term was from 2017 to 2020 and I was the rep on the Committee from TCD. Roles included attending IOPI committee meetings in Belfast and Dublin, publicising IOP membership to students in TCD and coordinating applications for degree accreditation by the IOP accreditation committee at IOP headquarters in London. The latter is described in more detail in Service to College. 2017 to 2020
Details Date From Date To
American Physical Society
Institute of Physics 1991 present
Charles H. Patterson, Molecular Ionization Energies from GW and Hartree-Fock Theory: Polarizability, Screening, and Self-Energy Vertex Corrections, Journal of Chemical Theory and Computing, 2024, Journal Article, PUBLISHED  URL
Arthur-Baidoo, E. and Danielson, J.R. and Surko, C.M. and Cassidy, J.P. and Gregg, S.K. and Hofierka, J. and Cunningham, B. and Patterson, C.H. and Green, D.G., Positron annihilation and binding in aromatic and other ring molecules, Physical Review A, 109, (6), 2024, Notes: [cited By 0], Journal Article, PUBLISHED  TARA - Full Text  DOI
Cassidy, J.P. and Hofierka, J. and Cunningham, B. and Rawlins, C.M. and Patterson, C.H. and Green, D.G., Many-body theory calculations of positron binding to halogenated hydrocarbons, Physical Review A, 109, (4), 2024, Notes: [cited By 1], Journal Article, PUBLISHED  TARA - Full Text  DOI
Waide D.T., Patterson C.H., Excited states from GW/BSE and Hartree-Fock theory: Effects of polarizability and transition type on accuracy of excited state energies, Journal of Chemical Physics, 161, (22), 2024, Journal Article, PUBLISHED  DOI
Rawlins, C.M., Hofierka, J., Cunningham, B., Patterson, C.H., Green, D.G., Many-Body Theory Calculations of Positron Scattering and Annihilation in H2, N2 and CH4, Physical Review Letters, 130, (26), 2023, Journal Article, PUBLISHED  DOI
Sahoo, Smruti Ranjan, Patterson, Charles H., Spectroscopic Identification of the Charge Transfer State in Thiophene/Fullerene Heterojunctions: Electroabsorption Spectroscopy from GW/BSE Calculations, The Journal of Physical Chemistry C, 127, (32), 2023, p15928-15942 , Journal Article, PUBLISHED  TARA - Full Text  DOI
Rawlins, C.M. and Hofierka, J. and Cunningham, B. and Patterson, C.H. and Green, D.G., Many-Body Theory Calculations of Positron Scattering and Annihilation in H2, N2, and CH4, Physical Review Letters, 130, (26), 2023, Notes: [cited By 9], Journal Article, PUBLISHED  TARA - Full Text  DOI
Chaudhuri, D. and Patterson, C.H., Reliable prediction of the singlet-triplet gap in TADF molecules with GW/BSE approach, 2022 International Conference on Numerical Simulation of Optoelectronic Devices (NUSOD), Turin, Italy, 12th September 2022, 2022, pp85-86 , Conference Paper, PUBLISHED  DOI
Chaudhuri, D. and Patterson, C.H., TDDFT versus GW/BSE Methods for Prediction of Light Absorption and Emission in a TADF Emitter, Journal of Physical Chemistry A, 126, (51), 2022, p9627-9643 , Notes: [cited By 0], Journal Article, PUBLISHED  DOI
Sahoo, S.R. and Patterson, C.H., Charge transfer excitons in pi -stacked thiophene oligomers and P3[Alkyl]T crystals: CIS calculations and electroabsorption spectroscopy, Journal of Chemical Physics, 157, (7), 2022, Notes: [cited By 0], Journal Article, PUBLISHED  DOI
  

Page 1 of 9
Charles H. Patterson, Debapriya Chaudhuri and Smruti Sahoo, Charge transfer states in molecular and crystalline organics with PV and TADF applications, 2024 Sanibel Symposium, St. Augustine, FL, USA, 25th February to 1st, 2024, Oral Presentation, PRESENTED
Charles H. Patterson, Debapriya Chaudhuri and Smruti Ranjan Sahoo, Charge transfer states and electroabsorption spectroscopy: challenges to theory, 16th International Conference on Organic Electronics, Madrid, Spain, 3rd to 7th July 2023, 2023, Oral Presentation, PRESENTED
Smruti Ranjan sahoo and Charles H. Patterson, Charge Transfer Excitons in pi-stacked Thiophene, New Horizone in Photochemical Water Splitting and heterogeneous Catalysis, Dublin, Ireland, 29th-31st May 2022, 2022, Oral Presentation, PRESENTED
B. Cunningham, J. Hofierka, C.M. Rawlins, A.R. Swann, J.P. Cassidy, S.K. Gregg, C.H. Patterson, and D.G. Green, Many-body theory of low-energy positron interactions with atoms, molecules and condensed matter, 2022, Poster, PRESENTED
Charles H. Patterson and Dermot G. Green, Exciton: a code for many-body calculations in molecules and materials, Psi-k Conference 2022, Lausanne, Switzerland, 22-25 August 2022, 2022, Poster, PRESENTED
Emilio Artacho (University of Cambridge) Volker Blum (Duke University) Donal Mackernan (University College Dublin) Charles Patterson, David O'Regan Stefano Sanvito (Trinity College Dublin), CECAM Extended Software Development Workshop: Scaling Electronic Structure Applications, 7-18 January 2019, 2019, Trinity College Dublin, Meetings /Conferences Organised, PUBLISHED
Charles H. Patterson, Density fitting approach to many-body calculations, 24th ETSF Workshop on Electronic Excitations, Jena, Germany, 16 - 20 September 20, edited by Claudia Roedl , 2019, Notes: [No workshop proceedings published], Oral Presentation, PRESENTED
P. Kumar and C. H. Patterson, Dielectric Anisotropy of the GaP/Si(001) Interface, DPG Spring Meeting, Berlin, Germany, 11-16 March 2018, 2018, Oral Presentation, PRESENTED
John McGilp, Cormac McGuinness, Charles Patterson, 12th International Conference on Optics of Surfaces and Interfaces, 25-30 June 2017, 2017, Trinity College Dublin, Meetings /Conferences Organised, PUBLISHED
C. H. Patterson, 'EXCITON code', TCD, 2017, -, Notes: [Code allows excitation spectra of molecules, 2-D slabs and 3-D bulk crystals to be computed using a combination of self-consistent Hartree-Fock, GW approximation and Bethe-Salpeter Equation calculations. The code is written in a gaussian orbital basis. Exciton consists of about 50,000 lines of C++ and message passing interface (MPI) code. The code has not yet been published but may be released under an Open Source license in future. It has been in development since 2004.], Software, PRODUCED

  


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Award Date
Fellow of TCD 2000
Trinity Global Engagement Award 2018
Prediction of excited state properties is essential for tailoring environmentally friendly organic materials for new solar cell and light emitting devices. Treatment of organic molecular systems with large unit cells using conventional plane-wave based codes is prohibitively expensive in computer time. I developed a local, Gaussian basis computer code called Exciton aimed at pursuing many-body calculations in molecules and condensed matter. My research is now focused on modelling excited states of organic molecules and polymers with photovoltaic and light emitting applications and especially charge transfer excited states which lead to formations of charge carriers when a charge transfer excited state decays into charged polarons. This has led to 10 peer reviewed publications since 2020 in leading journals and IRC and SFI grants. Journals include Nature, Physical Review Letters (2), Journal of Chemical Theory and Computing, Journal of Physical Chemistry A and C(2), Physical Review A(2) and Journal of Chemical Physics(2). This has been achieved as a result of about 15 years of intensive code development work on the Exciton code begun during a sabbatical year at the Quantum Theory Project at the University of Florida in 2005/6. Acquiring funding for a major code scientific development project in Ireland is extremely difficult and I have done this work without funding support until recently. It remains difficult to find postdoctoral fellows with the necessary many-body theory and code development experience. Exciton now consists of two parts with 30,000 (molecules) and 37,000 (periodic materials) lines of code written and maintained by me. I have collaborated with Dermot Green"s group in Queen"s University Belfast since 2020. He works on anti-matter matter interactions especially positrons electron interactions. He adapted Exciton to include electron-positron interactions and this led to the joint Nature paper in 2022 which was highlighted in the Irish Times in an unsolicited article.